About Virtual Microscope

An overview, our backstory, the user guide and contacts

How a virtual microscope works

Technologically, virtual microscopes are close cousins of the various 'virtual globe' mapping applications that you might use online to find a restaurant or explore a potential holiday destination. While not a fully-fledged Geographical Information System (GIS), they nevertheless use similar wizardry to deliver imagery at multiple scales.

Virtual microscopes have only been possible since the advent of internet connections fast enough to allow rapid transfer of images to a browser window. The virtual microscope system works by presenting small parts of a large image that has been diced electronically into many pieces, an approach used to facilitate zooming and panning in many web and phone-based map applications. The diced images are not simply equal mosaic pieces of the whole image; the dicing software creates pieces at several resolutions, so the viewer can both pan around the image and zoom in and out. Dicing the large images of microscope slides is undertaken using a drawing package – but it's automated so they are not cut by hand! The resulting file structure is a pyramid, rising from a single low resolution image to many hundreds of images at the highest resolution. The browser viewer only loads the image of the area required at the zoom level specified, making for rapid loading, viewing or moving and giving the impression of zooming and panning.

Not content with this, for many samples our Virtual Microscope also presents rotatable animations of smaller areas at a few key points. These are technically rather simpler than the main image, constructed from a large number of images of the same view, under plane-polarised light and crossed polars, taken at small increments of rotation through a full 360° turn. Similarly to the main image, these rely on a good internet connection to deliver the images to the browser and simulate the smooth rotation typical of a physical microscope.

Further information

If you would like to know more about the features you see in the Virtual Microscope, or how geologists identify and classify rocks and minerals, check out these resources.